Terracotta: A tool for conducting experimental research on student learning.

For researchers seeking to improve education, a common goal is to identify teaching practices that have causal benefits in classroom settings. To test whether an instructional practice exerts a causal influence on an outcome measure, the most straightforward and compelling method is to conduct an experiment. While experimentation is common in laboratory studies of learning, experimentation is increasingly rare in classroom settings, and to date, researchers have argued it is prohibitively expensive and difficult to conduct experiments on education in situ. To address this challenge, we present Terracotta (Tool for Education Research with RAndomized COnTrolled TriAls), an open-source web application that integrates with a learning management system to provide a comprehensive experimental research platform within an online class site. Terracotta automates randomization, informed consent, experimental manipulation of different versions of learning activities, and export of de-identified research data. Here we describe these features, and the results of a live classroom demonstration study using Terracotta, a preregistered replication of McDaniel et al. (Journal of Applied Research in Memory and Cognition, 1(1), 18-26, 2012). Using Terracotta, we experimentally manipulated online review assignments so that consenting students alternated, on a weekly basis, between taking multiple-choice quizzes (retrieval practice) and reading answers to these quizzes (restudy). Students' performance on subsequent exams was significantly improved for items that had been in retrieval practice review assignments. This successful replication demonstrates that Terracotta can be used to experimentally manipulate consequential aspects of students' experiences in education settings.

Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata.

The amount of DNA sequencing data has been exponentially growing during the past decade due to advances in sequencing technology. Processing and modeling large amounts of sequencing data can be computationally intractable for desktop computing platforms. High performance computing (HPC) resources offer advantages in terms of computing power, and can be a general solution to these problems. Using HPCs directly for computational needs requires skilled users who know their way around HPCs and acquiring such skills take time. Science gateways acts as the middle layer between users and HPCs, providing users with the resources to accomplish compute-intensive tasks without requiring specialized expertise. We developed a web-based computing platform for genome biologists by customizing the PHP Gateway for Airavata (PGA) framework that accesses publicly accessible HPC resources via Apache Airavata. This web computing platform takes advantage of the Extreme Science and Engineering Discovery Environment (XSEDE) which provides the resources for gateway development, including access to CPU, GPU, and storage resources. We used this platform to develop a gateway for the dREG algorithm, an online computing tool for finding functional regions in mammalian genomes using nascent RNA sequencing data. The dREG gateway provides its users a free, powerful and user-friendly GPU computing resource based on XSEDE, circumventing the need of specialized knowledge about installation, configuration, and execution on an HPC for biologists. The dREG gateway is available at: https://dREG.dnasequence.org/.